Shiio, Y., Aebersold, R., (2006) “ Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry ” Nature Protocols, 1 (1): 139 - 145

 

Shiio, Y.,Rose, D.W., Aur, R., Donohoe, S., Aebersold, R., and Eisenman, R.N. (2005)“ Identification and characterization of SAP25, a novel component of the mSin3 corepressor complex. ” Molecular and Cellular Biology, 26:1386-1397.

 

Shiio, Y., Suh, K.S., Lee, H., Yuspa, S.H, Eisenman, R.N., and Aebersold, R. (2005) “ Quantitative proteomic analysis of Myc-induced apoptosis: a direct role for Myc induction of the mitochondrial chloride ion channel, mtCLIC/CLIC4. ” J Bio Chem, 5:2750-2756

 

Shiio, Y., Donohoe, E.C., Yi, D.R., Goodlett, Aebersold, R., and Eisenman, R.N. (2003) “ Quantitative Proteomic Analysis of chromatin-associated factors.” The Journal of the American Society for Mass Spectrometry, 14:696-703.

 

Shiio, Y., and Eisenman, R.N. (2003).“ From the Cover: Histone sumoylation is associated with transcriptional repression.” Proc. Natl. Acad. Sci. U.S.A., 100:13225-13230.

 

Shiio Y., Donohoe, S., Yi, E.C., Goodlett, D.R., Aebersold, R., and Eisenman, R.N. (2002) “ Quantitative Proteomic Analysis of Myc Oncoprotein Function.” EMBO J., 21:5088-5096.

 

McArthur, G.A., Laherty, C.D., Queva, C., Hurlin, P.J., Loo, L, James, L., Grandori, C., Gallant, P., Shiio, Y., Hokanson, W.C., Bush, A.C., Cheng, P.F., Lawrence, Q.A., Pulverer, B., Koshkinen, P.J., Foley, K.P., Ayer, D.E., and Eisenman, R.N. (1998) “ The Mad protein family links transcriptional repression to cell differentiation. ” Cold Spring Harbor Symposia on Quantitative Biology, 63:423-433.

 

Sowa, Y., Shiio, Y., Fujita, T., Matsumoto, T., Okuyama, Y., Kato, D., Inoue, J., Sawada, J., Goto, M., Watanabe, H., Handa, H., and Sakai, T. (1997) “Retinoblastoma binding factor 1 site in the core promoter region of the human RB gene is activated by hGABP/E4TF1.” Cancer Research 57:3145-3148.

 

Gallant, P., Shiio, Y., Cheng, P.F., Parkhurse, S.M., and Eisenmann R.N. (1996) “ Myc and Max homologs in Drosophila. ” Science 274:1523-1527.

 

Shiio, Y., Sawada J., Handa, H., Yamamoto, T., and Inoue, J. (1996) “Activation of the retinoblastoma gene expression by Bcl-3: implication for muscle cell differentiation.” Oncogene 12:1837-1845.

 

Shiio, Y., Itoh, J., and Inoue, J. (1995) Epitope Tagging in “ Methods in Enzymology, ” 254:497-502.

 

Shiio, Y., Mamamoto, and Yamaguchi N. (1993) “Identification of a DNA element that can enhance p53-mediated transactivation.” Oncogene, 8:2059-2065.

 

Shiio, Y., Yamamoto, T., and Yamaguchi, N. (1992) “ Negative regulation of Rb expression by the p53 gene product.” Proc. Natl. Acad. Sci. USA, 89:5206-5210.