Greehey CCRI News & Events Archive

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BMC Bioinformatics: Selected articles from the IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2013): Bioinformatics

November 6, 2014

Zijing Mao, Chifeng Ma, Tim H-M Huang, Yidong Chen & Yufei Huang Abstract DNA methylation is a common epigenetic marker that regulates gene expression. A robust and cost-effective way for measuring whole-genome methylation is Methyl-CpG binding dom …


Nucleic Acids Research: MeT-DB: a database of transcriptome methylation in mammalian cells

November 6, 2014

Hui Liu, Mario A Flores, Jia Meng, Lin Zhang, Xinyu Zhao, Manjeet K. Rao, Yidong Chen, Yufei Huang Abstract Methyltranscriptome is an exciting new area that studies the mechanisms and functions of methylation in transcripts. The MethylTranscriptome Dat …


Plant Physiology: De novo genome assembly of the economically important weed horseweed using integrated data from multiple sequencing platforms

November 1, 2014

Yanhui Peng 1, Zhao Lai 1, Thomas Lane 1, Madhugiri Nageswara-Rao 1, Miki Okada 1, Marie Jasieniuk 1, Henriette O’Geen 1, Ryan W Kim 1, R Douglas Sammons 1, Loren H Rieseberg 1, C Neal Stewart Jr 2 Erratum in Plant Physiol. 2014 Dec;166(4):2218 Abstrac …


Breast Cancer Research and Treatment: Use of risk-reducing surgeries in a prospective cohort of 1,499 BRCA1 and BRCA2 mutation carriers

October 14, 2014

Xinglei Chai 1, Tara M Friebel, Christian F Singer, D Gareth Evans, Henry T Lynch, Claudine Isaacs, Judy E Garber, Susan L Neuhausen, Ellen Matloff, Rosalind Eeles, Nadine Tung, Jeffrey N Weitzel, Fergus J Couch, Peter J Hulick, Patricia A Ganz, Mary B …


Methods: A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package

October 1, 2014

Author links open overlay panelJiaMenga,  ZhiliangLua,  HuiLiub,  LinZhangb,  ShaowuZhangc, YidongChende, Manjeet K.Raoef,  YufeiHuanggd Abstract Despite the prevalent studies of DNA/Chromatin-related epigenetics, such as, histone modifications and DNA …


Congressional Childhood Cancer Caucus: Caucus Applauds NCI for Naming Pediatric Oncologist to Council of Research Advocates

September 30, 2014

National Cancer Institute Names UTHSCSA Pediatric Hematologist-Oncologist to Council of Research Advocates The National Cancer Institute (NCI) recently nominated a new member to its NCI Council of Research Advocates, Greg Aune, a pediatric hematologist …


New England Journal of Medicine: AR-V7 and Resistance to Enzalutamide and Abiraterone in Prostate Cancer

September 11, 2014

Emmanuel S. Antonarakis, MD, Changxue Lu, PhD, Hao Wang, PhD, Brandon Luber, Sc.M., Mary Nakazawa, M.H.S., Jeffrey C. Roeser, B.S., Yan Chen, PhD, Tabrez A. Mohammad, PhD, Yidong Chen, PhD, Helen L. Fedor, B.S., Tamara L. Lotan, MD, Qizhi Zheng, MD, An …


Mechanisms of Ageing and Development: Short-term rapamycin treatment in mice has few effects on the transcriptome of white adipose tissue compared to dietary restriction

September 1, 2014

Wilson C.Foka CarolinaLivibc AlexBokovcd ZhenYue YidongChendfg ArlanRichardsonah Viviana I.Pérezhi Abstract Rapamycin, a drug that has been shown to increase lifespan in mice, inhibits the target of rapamycin (TOR) pathway, a major pathway that regulat …


PLoS One: Genome-Wide Association Analysis of Radiation Resistance in Drosophila melanogaster

August 14, 2014

Mahesh Vaisnav, Chao Xing, Hung-Chih Ku, Daniel Hwang, Strahinja Stojadinovic, Alexander Pertsemlidis, John M. Abrams  Abstract Background Ionizing radiation is genotoxic to cells. Healthy tissue toxicity in patients and radiation resistance in tumors …


St. Baldrick’s: UT Health Science Center Pediatric Cancer Researcher Receives Grant in Groundbreaking Work for Childhood Cancer Survivors

August 13, 2014

UT Health Science Center Pediatric Cancer Researcher Receives Grant in Groundbreaking Work for Childhood Cancer Survivors A pediatric hematologist-oncologist from the University of Texas Health Science Center at San Antonio has been awarded a grant fro …


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