NGS Seminar Archives
January 23, 2024
GCCRI Genome Sequencing Facility & 10x Genomics Seminar: Spatial Transcriptomics Sample Prep
May 2, 2023
PacBio Lunch & Learn
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April 25, 2023
Nanostring Spatial Multiomics Lunch & Learn
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April 11, 2023
10x Genomics webinars
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April 25, 2023
Nanostring Spatial Multiomics Lunch & Learn
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April 11, 2023
10x Genomics webinars
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March 7, 2023
Twist BioSciences
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July 7, 2022
UTHSCSA CytAssist Showcase: 10x Genomics’ New Spatial Instrument
June 30, 2022
10X Day @ GCCRI0
Presentation Archives
Spence Fast, MS., Gain a Multidimensional View of Biology With Single-Cell Solutions
Leilani Marty Santos, PhD., Breaking Spacial Barriers with Visium Spacial Solutions
Jason Koth, Gain Flexibility with Sample Storage and Multiplexing with Fixed RNA Profiling
Fatjon Leti, Analyzing Spacial and High-Resolution Single-Cell Data
Fatjon Leti, Single-Cell Sample Preparation: Beyond the Basics
Mahdis Rhamani, Visium Spatial Gene Expression
2022
Illumina Lunch & Learn
April, 18, 2022
2021
09/14
TwinStrand Biosciences – Solving Genomic Needle-In-A-Haystack Challenges
Presentation by: Aaron Boswell, Associate Director of Product Development, TwinStrand Biosciences
Join us for this webinar on how TwinStrand Biosciences Duplex Sequencing™ Technology provides a greater than 10,000-fold increase in accuracy over standard next-generation sequencing by virtually eliminating background noise and revealing true mutations. We will provide an overview of the technology and some of the applications where it is being used in medicine and life sciences to help improve human health and cure diseases such as:
Early detection and residual disease monitoring in cancer
- Tumor evolution monitoring
- Immunotherapy monitoring
- Mutagenesis detection
TwinStrand Presentation
04/06
Single-Cell Sequencing & Data Analysis, Hosted by Greehey CCRI GSF
- Introduction to scRNA-seq capability and services at Greehey CCRI GSF Dr. Zhao Lai, Director, Genome Sequencing Facility
- scRNA-seq Data Analysis implementation Dr. Zhenqing Ye, Bioinformatics Manager, GSF
- scRNA-seq, Learning, and collaboration Dr. Yidong Chen, Director, Computational Biology and Bioinformatics
3/18 & 3/25
10X Genomics: Biology at True Resolution, Resolve biological complexities with single-cell and spatial solutions
Thursday, March 18, 2021, | 11:00 AM CST
Session 1: Gain a Multidimensional View of Biology with Single-Cell Solutions
Presenter: Spence Fast, MS, Science and Technology Advisor
See how 10x Genomics is helping researchers uncover molecular insights, explore cellular
heterogeneity, dissect cell-type differences, investigate the innate and adaptive immune
the system, identify rare cell types, detect novel biomarkers, and map the epigenetic landscape
cell by cell with Chromium Single Cell Solutions.
Thursday March 25, 2021 | 11:00 AM CST
Session 2: Envision New Dimensions: Visium Spatial Solutions
Presenter: Spence Fast, MS, Science and Technology Advisor
Join us for this seminar to learn how Visium Spatial Solutions from 10x Genomics give you a
comprehensive understanding of the relationships between cellular function, phenotype,
relationships, and location in intact tissue sections03/25/2021: sing cell
2020
8/25
10X Genomics Session 2: “Analyzing Spatial and High-Resolution Single-Cell Multiomic Data”, A discussion of analysis pipelines and visualization software for processing single cell and spatial data
Speakers
Spence Fast, MS, Science, and Technology Advisor, 10x Genomics
Dr. Ashley Benham, PhD, Field Applications Scientist, 10x Genomics
Access session two slides, handouts, and other downloads below.
https://gccri.uthscsa.edu/10x-genomics-seminar-session-2-analyzing-spatial-and-high-resolution-single-cell-multiomic-data/
8/18
NGS Webinar: 10X Genomics: Session 1 “Biology at True Resolution”
Handout
- Part One (pg 1-10)
- Part Two (pg 11-23)
- Part Three (pg 24-33)
- Part Four (pg 34-43)
- Part Five (pg 44-71)
- Part Six (pg 72-80)
2019
12/10
NGS User Group Meeting
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11/20
NGS Lunch & Learn “Beyond ATCG – Application of Oxford Nanopore Sequencing”
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4/24
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“Chromium Single Cell Gene Expression with Feature Barcoding Analysis, Software Training” Presented by Staff Field Application Scientist, John Harrington, 10x Genomics
7/23
NGS Seminar
9am – 10:30am
Protocol/Wetlab PART ONE, presented by Staff Field Application Scientist Neil Winegarden,10x Genomics
Protocol/Wetlab PART TWO, presented by Staff Field Application Scientist Neil Winegarden,10x Genomics
7/17
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NGS-based CRISPR QC Applications and SeqCap EZ HyperCap Workflow for Targeted Sequencing, “Presented by Jason Liu, PhD Roche Field Applications Scientist”
4/2
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Single-Cell Seminar
11:00am – 12:30pm, Auditorium 2.160 – Greehey CCRI
Presentations:
“Emerging Single Cell Applications,” Steve Hoffman, Illumina Senior Segment Manager – Single Cell
“Single Cell Techniques and Experimental Considerations,” Russ Carmical, Illumina Sr. Sequencing Specialist
1/17
Next-Generation Sequencing Seminar
11:00 am – 12:00 Noon, Auditorium 2.160 – Greehey CCRI
“Single Cell Solutions for Genomics, Transcriptomics, and Epigenomics,” Presented by Nirav Patel, 10x Genomics
2018
11/13
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Next-Generation Sequencing Lunch and Learn
11:00 am – 12:00pm, Classroom 2.150 – Greehey CCRI
“RNA-Seq Experiment Pipeline”, Presented by Jeff Hudson, Lexogen North American Account Manager,
7/23-24
A Bioinformatics Workshop
9:30am – 4:00pmClassroom 2.150 – Greehey CCRI
“Public-domain Genomic Data, Analysis, and Visualization of Genomic Data,” Presented by Drs. Siyuan Zheng and Yidong Chen, Shimail Gillani
Microsoft Azure Cloud Computing and Genomics
5/10
Lunch & Learn
11:00 am – 12:00 pm, Auditorium 2.160 – Greehey CCRI
“Seq-ing the Complete Picture,” Presented by Justin Lenhart, PhD, Swift BioSciences
2/26
Lunch & Learn
11:00 am – 12:00pm, Auditorium 2.160 – Greehey CCRI
“Nanostring Technologies Introduction: Moving from Genomics Discovery to Translational Research,” Presented by Dr. Cheryl C. Tan, Field Applications Scientist
2017
11/6
Lunch & Learn
11:00am – 12:00pm, Auditorium 2.160 – Greehey CCRI
“Driving Towards Personalized Medicine,” Presented by Terri Mueller, Roche
5/26
Lunch & Learn
10:00am – 12:00pm, Common Area – Greehey CCRI
“Ingenuity Pathway Analysis (IPA),” Presented by Dev Mistry, PhD, Field Applications Scientist, Qiagen Advanced Genomics, and Joe Salvatore
Account Manager, Qiagen Advanced Genomics
Additional Documents: “IPA: Overview & Development”; “OMICSOFT – Lands”,
4/6
Lunch & Learn
10:30am – 11:30am, Common Area – Greehey CCRI
“NGS Applications on the Illumina NextSeq 500”, Presented by Dr. Mehdi Keddache Illumina Sequencing Specialist
2016
12/15
Lunch & Learn
9:00am – 10:30am, Common Area – Greehey CCRI
“Illumina | Bio-Rad Single-Cell Sequencing Solution,” Presented by Dr. Lai & Dr. Chen
11/16
Lunch & Learn: NGS: Qiagen Advanced Genomics
11:00am – 12:00pm, Auditorium, 2.160 – Greehey CCRI
“QIAGEN Bioinformatics” Presented by Dr. Neja Jalan, Qiagen, Field Application Scientist
10/27
Lunch & Learn: NGS: Digital RNAseq & Library Prep Seminars
11:00am – 12:00pm, Auditorium, 2.160 – Greehey CCRI
Presented by Dr. Sam Rulli, Jr., Qiagen Global Product Manager
Additional Information: QiaSeq Targeted RNA panels
9/22
Lunch & Learn
11:00am – 12:00pm, Auditorium, 2.160 – Greehey CCRI
“Illumina NGS Library Preparation Applications & Notes” Presented by Dr. Zhao Lai, Greehey CCRI, and Matt Angel, Illumina Library Preparation Specialist
8/28
Lunch & Learn: GSF Upgrade – Illumina HiSeq 3000
11:00am – 12:00pm, Classroom, 2.150 – Greehey CCRI
“HS3000 vs HS2000”, Presented by Dr. Zhao Lai (Greehey CCRI) & Mehdi Keddache (Illumina Sequencing Specialist)