Nature: Study cancer survivors

April 9, 2019

More and more people are living for years after treatment. Researchers should look for ways to identify and ease long-term effects. When Gregory Aune was 16, he wasn’t particularly concerned about the lasting effects of the drugs and radiation that he was given to treat his lymphoma. “I saw kids around me die, so I […]


The Journal of Clinical Endocrinology & Metabolism: Synonymous but Not Silent: A Synonymous VHL Variant in Exon 2 Confers Susceptibility to Familial Pheochromocytoma and von Hippel-Lindau Disease

April 9, 2019

Shahida K Flores, Ziming Cheng, Angela M Jasper, Keiko Natori, Takahiro Okamoto, Akiyo Tanabe, Koro Gotoh, Hirotaka Shibata, Akihiro Sakurai, Takuya Nakai, Xiaojing Wang, Magnus Zethoven, Shiva Balachander, Yuichi Aita, William Young, Jr., Siyuan Zheng, Kazuhiro Takekoshi, Eijiro Nakamura, Richard W Tothill, Ricardo C T Aguiar, Patricia L M Dahia Abstract Context von Hippel-Lindau (VHL) disease, comprising renal cancer, hemangioblastoma, and/or pheochromocytoma (PHEO), is caused by missense or truncating variants of the VHL tumor-suppressor gene, which […]


Journal of Trauma and Acute Care Surgery: A prospective study in severely injured patients reveals an altered gut microbiome is associated with transfusion volume

April 1, 2019

Susannah E Nicholson 1, David M Burmeister, Taylor R Johnson, Yi Zou, Zhao Lai, Shannon Scroggins, Mark DeRosa, Rachelle B Jonas, Daniel R Merrill, Caroline Zhu, Larry M Newton, Ronald M Stewart, Martin G Schwacha, Donald H Jenkins, Brian J Eastridge Abstract Background: Traumatic injury can lead to a compromised intestinal epithelial barrier and inflammation. While alterations in the gut microbiome of critically injured patients may influence clinical outcomes, the impact […]



Investigative & Clinical Urology: Microbiome diversity in carriers of fluoroquinolone resistant Escherichia coli

March 1, 2019

Michael A Liss 1 2, Robin J Leach 1 3, Elizabeth Rourke 1, Allison Sherrill 1, Teresa Johnson-Pais 1 3, Zhao Lai 4, Joseph Basler 1, James R White 5, Jan E Patterson 6 Abstract Purpose: Fluoroquinolone-resistant (FQR) Escherichia coli causes transrectal prostate biopsy infections. In order to reduce the colonization of these bacteria in carriers, we would like to understand the surrounding microbiome to determine targets for decolonization. Materials and methods: We perform an observational study to […]


Genome Research: PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations

March 1, 2019

Bo Wen, Xiaojing Wang, Bing Zhang Massively parallel or second-generation sequencing-based genomic studies continuously identify new genomic alterations that may lead to novel protein sequences, which are attractive candidates for disease biomarkers and therapeutic targets after proteomic validation. Integrative proteogenomic methods have been developed to use mass spectrometry (MS)-based proteomics data for such validation. These […]




PNAS: Probing initial transient oligomerization events facilitating Huntingtin fibril nucleation at atomic resolution by relaxation-based NMR

February 26, 2019

Samuel A. Kotler, Vitali Tugarinov, Thomas Schmidt, Alberto Ceccon, David S. Libich, Rodolfo Ghirlando, Charles D. Schwieters, and G. Marius Clore Abstract The N-terminal region of the huntingtin protein, encoded by exon-1, comprises an amphiphilic domain (httNT), a polyglutamine (Q n ) tract, and a proline-rich sequence. Polyglutamine expansion results in an aggregation-prone protein responsible for Huntington’s disease. Here, we study the earliest events […]